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    » Non-additivity in protein-DNA binding
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    BMCBI
    2010
    95views more  BMCBI 2010»
    An effective approach for identification of in vivo protein-DNA binding sites from paired-end ChIP-Seq data
    13 years 4 months ago
    An effective approach for identification of in vivo protein-DNA binding sites from paired-end ChIP-Seq data
    Download  www.biomedcentral.com
    Background: ChIP-Seq, which combines chromatin immunoprecipitation (ChIP) with high-throughput massively parallel sequencing, is increasingly being used for identification of prot...
    Congmao Wang, Jie Xu, Dasheng Zhang, Zoe A. Wilson...
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    BMCBI
    2010
    167views more  BMCBI 2010»
    Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies
    13 years 4 months ago
    Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies
    Download  www.biomedcentral.com
    Background: Knowledge of transcription factor-DNA binding patterns is crucial for understanding gene transcription. Numerous DNA-binding proteins are annotated as transcription fa...
    Denitsa Alamanova, Philip Stegmaier, Alexander E. ...
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    BIOINFORMATICS
    2005
    46views more  BIOINFORMATICS 2005»
    Non-additivity in protein-DNA binding
    13 years 4 months ago
    Non-additivity in protein-DNA binding
    Download  biomaps.rutgers.edu
    Ruadhan A. O'Flanagan, Guillaume Paillard, Richard...
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    BMCBI
    2006
    110views more  BMCBI 2006»
    Design of a combinatorial DNA microarray for protein-DNA interaction studies
    13 years 4 months ago
    Design of a combinatorial DNA microarray for protein-DNA interaction studies
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    Background: Discovery of precise specificity of transcription factors is an important step on the way to understanding the complex mechanisms of gene regulation in eukaryotes. Rec...
    Julian Mintseris, Michael B. Eisen
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    NAR
    2011
    196views Computer Vision» more  NAR 2011»
    UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DN
    12 years 7 months ago
    UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DN
    Download  nar.oxfordjournals.org
    The Universal PBM Resource for OligonucleotideBinding Evaluation (UniPROBE) database is a centralized repository of information on the DNAbinding preferences of proteins as determ...
    Kimberly Robasky, Martha L. Bulyk
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