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» Non-breaking Similarity of Genomes with Gene Repetitions
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CPM
2007
Springer
102views Combinatorics» more  CPM 2007»
13 years 11 months ago
Non-breaking Similarity of Genomes with Gene Repetitions
Abstract. In this paper we define a new similarity measure, the nonbreaking similarity, which is the complement of the famous breakpoint distance between genomes (in general, betw...
Zhixiang Chen, Bin Fu, Jinhui Xu, Bo-Ting Yang, Zh...
JCB
2002
87views more  JCB 2002»
13 years 4 months ago
The Repetitive Sequence Database and Mining Putative Regulatory Elements in Gene Promoter Regions
At least 43% of the human genome is occupied by repetitive elements. Moreover, around 51% of the rice genome is occupied by repetitive elements. The analysis of repetitive element...
Jorng-Tzong Horng, Hsien-Da Huang, Ming-Hui Jin, L...
TAMC
2009
Springer
13 years 11 months ago
Approximability and Fixed-Parameter Tractability for the Exemplar Genomic Distance Problems
In this paper, we present a survey of the approximability and fixed-parameter tractability results for some Exemplar Genomic Distance problems. We mainly focus on three problems: ...
Binhai Zhu
GCB
2003
Springer
105views Biometrics» more  GCB 2003»
13 years 10 months ago
In silico prediction of UTR repeats using clustered EST data
Clustering of EST data is a method for the non-redundant representation of an organisms transcriptome. During clustering of large amounts of EST data, usually some large clusters ...
Stefan A. Rensing, Daniel Lang, Ralf Reski