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» Non-contiguous Sequence Pattern Queries
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BMCBI
2008
86views more  BMCBI 2008»
13 years 5 months ago
Subfamily specific conservation profiles for proteins based on n-gram patterns
Background: A new algorithm has been developed for generating conservation profiles that reflect the evolutionary history of the subfamily associated with a query sequence. It is ...
John K. Vries, Xiong Liu
PODS
2001
ACM
145views Database» more  PODS 2001»
14 years 5 months ago
Optimization of Sequence Queries in Database Systems
The need to search for complex and recurring patterns in database sequences is shared by many applications. In this paper, we discuss how to express and support efficiently sophis...
Reza Sadri, Carlo Zaniolo, Amir M. Zarkesh, Jafar ...
EDBT
2004
ACM
162views Database» more  EDBT 2004»
14 years 5 months ago
Non-contiguous Sequence Pattern Queries
Abstract. Non-contiguous subsequence pattern queries search for symbol instances in a long sequence that satisfy some soft temporal constraints. In this paper, we propose a methodo...
Nikos Mamoulis, Man Lung Yiu
IADIS
2003
13 years 6 months ago
Data Extraction from Web Database Query Result Pages via Tagsets and Integer Sequences
The World Wide Web is a collection of databases as well as web sites. Databases associated with web sites provide public access via query forms on web pages. They constitute an en...
Jerome Robinson
BMCBI
2002
109views more  BMCBI 2002»
13 years 5 months ago
Kangaroo - A pattern-matching program for biological sequences
Background: Biologists are often interested in performing a simple database search to identify proteins or genes that contain a well-defined sequence pattern. Many databases do no...
Doron Betel, Christopher W. V. Hogue