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DILS
2006
Springer
13 years 8 months ago
On Querying OBO Ontologies Using a DAG Pattern Query Language
The Open Biomedical Ontologies (OBO) is a consortium that serves as a repository of ontologies that are structured like directed acyclic graphs. In this paper we present a language...
Amarnath Gupta, Simone Santini
WEBDB
2009
Springer
112views Database» more  WEBDB 2009»
13 years 11 months ago
Querying DAG-shaped Execution Traces Through Views
The question whether a given set of views, defined by queries, can be used to answer another query, arises in several contexts such as query optimization, data integration and se...
Maya Ben-Ari, Tova Milo, Elad Verbin
BMCBI
2007
217views more  BMCBI 2007»
13 years 4 months ago
OntologyWidget - a reusable, embeddable widget for easily locating ontology terms
Background: Biomedical ontologies are being widely used to annotate biological data in a computer-accessible, consistent and well-defined manner. However, due to their size and co...
Catherine Beauheim, Farrell Wymore, Michael Nitzbe...
EDBT
2012
ACM
228views Database» more  EDBT 2012»
11 years 7 months ago
Towards scalable data integration under constraints
In this paper we consider the problem of answering queries using views, with or without ontological constraints, which is important for data integration, query optimization, and d...
George Konstantinidis, José Luis Ambite
CBMS
2006
IEEE
13 years 10 months ago
An Ontology-Driven Mediator for Querying Time-Oriented Biomedical Data
— Most biomedical research databases contain considerable amounts of time-oriented data. However, temporal knowledge about the contextual meaning of such data is not usually repr...
Martin J. O'Connor, Ravi Shankar, Amar K. Das