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» On delayed prediction of individual sequences
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BMCBI
2007
132views more  BMCBI 2007»
13 years 5 months ago
TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences
Background: Solenoid repeat proteins of the Tetratrico Peptide Repeat (TPR) family are involved as scaffolds in a broad range of protein-protein interactions. Several resources ar...
Manjunatha R. Karpenahalli, Andrei N. Lupas, Johan...
CADE
2001
Springer
14 years 6 months ago
Context Trees
Context trees are a popular and effective tool for tasks such as compression, sequential prediction, and language modeling. We present an algebraic perspective of context trees for...
Harald Ganzinger, Robert Nieuwenhuis, Pilar Nivela
BMCBI
2010
156views more  BMCBI 2010»
13 years 5 months ago
Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape
Background: Failure on Highly Active Anti-Retroviral Treatment is often accompanied with development of antiviral resistance to one or more drugs included in the treatment. In gen...
Kristof Theys, Koen Deforche, Gertjan Beheydt, Yve...
BMCBI
2008
112views more  BMCBI 2008»
13 years 5 months ago
A simplified approach to disulfide connectivity prediction from protein sequences
Background: Prediction of disulfide bridges from protein sequences is useful for characterizing structural and functional properties of proteins. Several methods based on differen...
Marc Vincent, Andrea Passerini, Matthieu Labb&eacu...
ICML
2008
IEEE
14 years 6 months ago
Sequence kernels for predicting protein essentiality
The problem of identifying the minimal gene set required to sustain life is of crucial importance in understanding cellular mechanisms and designing therapeutic drugs. This work d...
Cyril Allauzen, Mehryar Mohri, Ameet Talwalkar