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» On the Design of Codes for DNA Computing
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DNA
2005
Springer
144views Bioinformatics» more  DNA 2005»
13 years 10 months ago
Designing Nucleotide Sequences for Computation: A Survey of Constraints
We survey the biochemical constraints useful for the design of DNA code words for DNA computation. We define the DNA/RNA Code Constraint problem and cover biochemistry topics rel...
Jennifer A. Sager, Darko Stefanovic
WCC
2005
Springer
130views Cryptology» more  WCC 2005»
13 years 10 months ago
On the Design of Codes for DNA Computing
In this paper, we describe a broad class of problems arising in the context of designing codes for DNA computing. We primarily focus on design considerations pertaining to the phen...
Olgica Milenkovic, Navin Kashyap
BIRTHDAY
2004
Springer
13 years 10 months ago
Writing Information into DNA
The time is approaching when information can be written into DNA. This tutorial work surveys the methods for designing code words using DNA, and proposes a simple code that avoids ...
Masanori Arita
ICALP
2005
Springer
13 years 10 months ago
Randomized Fast Design of Short DNA Words
We consider the problem of efficiently designing sets (codes) of equal-length DNA strings (words) that satisfy certain combinatorial constraints. This problem has numerous motivati...
Ming-Yang Kao, Manan Sanghi, Robert T. Schweller
DNA
2007
Springer
106views Bioinformatics» more  DNA 2007»
13 years 8 months ago
Hardware Acceleration for Thermodynamic Constrained DNA Code Generation
Reliable DNA computing requires a large pool of oligonucleotides that do not produce cross-hybridize. In this paper, we present a transformed algorithm to calculate the maximum wei...
Qinru Qiu, Prakash Mukre, Morgan Bishop, Daniel J....