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» On the Similarity of Sets of Permutations and Its Applicatio...
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NAR
2000
122views more  NAR 2000»
13 years 5 months ago
ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons
ProDom contains all protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases (http://www.toulouse. inra.fr/prodom.html ). ProDom-CG result...
Florence Corpet, Florence Servant, Jér&ocir...
BMCBI
2008
130views more  BMCBI 2008»
13 years 5 months ago
An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories
Background: Understanding how proteins fold is essential to our quest in discovering how life works at the molecular level. Current computation power enables researchers to produc...
Hong Sun, Hakan Ferhatosmanoglu, Motonori Ota, Yus...
BMCBI
2006
124views more  BMCBI 2006»
13 years 5 months ago
ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes
Background: It necessary to use highly accurate and statistics-based systems for viral and phage genome annotations. The GeneMark systems for gene-finding in virus and phage genom...
Feng-Biao Guo, Chun-Ting Zhang
WWW
2006
ACM
14 years 6 months ago
Knowledge modeling and its application in life sciences: a tale of two ontologies
High throughput glycoproteomics, similar to genomics and proteomics, involves extremely large volumes of distributed, heterogeneous data as a basis for identification and quantifi...
Satya Sanket Sahoo, Christopher Thomas, Amit P. Sh...
BMCBI
2007
156views more  BMCBI 2007»
13 years 5 months ago
Bio: : NEXUS: a Perl API for the NEXUS format for comparative biological data
Background: Evolutionary analysis provides a formal framework for comparative analysis of genomic and other data. In evolutionary analysis, observed data are treated as the termin...
Thomas Hladish, Vivek Gopalan, Chengzhi Liang, Wei...