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STRINGOLOGY
2004
13 years 5 months ago
Conditional Inequalities and the Shortest Common Superstring Problem
We investigate the shortest common superstring problem (SCSSP). As SCSSP is APX-complete it cannot be approximated within an arbitrarily small performance ratio. One heuristic tha...
Uli Laube, Maik Weinard
CPM
2010
Springer
180views Combinatorics» more  CPM 2010»
13 years 9 months ago
Algorithms for Three Versions of the Shortest Common Superstring Problem
Abstract. The input to the Shortest Common Superstring (SCS) problem is a set S of k words of total length n. In the classical version the output is an explicit word SCS(S) in whic...
Maxime Crochemore, Marek Cygan, Costas S. Iliopoul...
EVOW
2007
Springer
13 years 10 months ago
A Probabilistic Beam Search Approach to the Shortest Common Supersequence Problem
The Shortest Common Supersequence Problem (SCSP) is a well-known hard combinatorial optimization problem that formalizes many real world problems. This paper presents a novel rando...
Christian Blum, Carlos Cotta, Antonio J. Fern&aacu...
SIAMDM
1998
89views more  SIAMDM 1998»
13 years 4 months ago
String Noninclusion Optimization Problems
For every string inclusion relation there are two optimization problems: find a longest string included in every string of a given finite language, and find a shortest string in...
Anatoly R. Rubinov, Vadim G. Timkovsky
WABI
2005
Springer
132views Bioinformatics» more  WABI 2005»
13 years 10 months ago
Perfect Sorting by Reversals Is Not Always Difficult
—We propose new algorithms for computing pairwise rearrangement scenarios that conserve the combinatorial structure of genomes. More precisely, we investigate the problem of sort...
Sèverine Bérard, Anne Bergeron, Cedr...