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CORR
2011
Springer
193views Education» more  CORR 2011»
13 years 11 days ago
On the regularity of iterated hairpin completion of a single word
Hairpin completion is an abstract operation modeling a DNA biooperation which receives as input a DNA strand w = xαyα, and outputs w = xαy¯αx, where x denotes the Watson-Cric...
Lila Kari, Steffen Kopecki, Shinnosuke Seki
SOFSEM
2012
Springer
12 years 28 days ago
Iterated Hairpin Completions of Non-crossing Words
Abstract. Iterated hairpin completion is an operation on formal languages that is inspired by the hairpin formation in DNA biochemistry. Iterated hairpin completion of a word (or m...
Lila Kari, Steffen Kopecki, Shinnosuke Seki
LATA
2009
Springer
14 years 4 days ago
Bounded Hairpin Completion
We consider a restricted variant of the hairpin completion called bounded hairpin completion. The hairpin completion is a formal operation inspired from biochemistry. Applied to a ...
Masami Ito, Peter Leupold, Victor Mitrana
ACTA
2007
126views more  ACTA 2007»
13 years 5 months ago
The syntactic monoid of hairpin-free languages
The study of hairpin-free words has been initiated in the context of DNA computing. DNA strands that, theoretically speaking, are finite strings over the alphabet {A, G, C, T} are...
Lila Kari, Kalpana Mahalingam, Gabriel Thierrin
IJFCS
2007
111views more  IJFCS 2007»
13 years 5 months ago
Involutively Bordered Words
In this paper we study a generalization of the classical notions of bordered and unbordered words, motivated by DNA computing. DNA strands can be viewed as finite strings over th...
Lila Kari, Kalpana Mahalingam