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» On-Line Linear-Time Construction of Word Suffix Trees
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CPM
2007
Springer
134views Combinatorics» more  CPM 2007»
13 years 9 months ago
Efficient Computation of Substring Equivalence Classes with Suffix Arrays
This paper considers enumeration of substring equivalence classes introduced by Blumer et al. [1]. They used the equivalence classes to define an index structure called compact dir...
Kazuyuki Narisawa, Shunsuke Inenaga, Hideo Bannai,...
ESA
1998
Springer
169views Algorithms» more  ESA 1998»
13 years 9 months ago
Augmenting Suffix Trees, with Applications
Information retrieval and data compression are the two main application areas where the rich theory of string algorithmics plays a fundamental role. In this paper, we consider one ...
Yossi Matias, S. Muthukrishnan, Süleyman Cenk...
SIGMOD
2007
ACM
169views Database» more  SIGMOD 2007»
14 years 5 months ago
Genome-scale disk-based suffix tree indexing
With the exponential growth of biological sequence databases, it has become critical to develop effective techniques for storing, querying, and analyzing these massive data. Suffi...
Benjarath Phoophakdee, Mohammed J. Zaki
IJFCS
2008
110views more  IJFCS 2008»
13 years 5 months ago
Indexing Gapped-Factors Using a Tree
We present a data structure to index a specific kind of factors, that is of substrings, called gapped-factors. A gapped-factor is a factor containing a gap that is ignored during ...
Pierre Peterlongo, Julien Allali, Marie-France Sag...
JMLR
2008
148views more  JMLR 2008»
13 years 5 months ago
Linear-Time Computation of Similarity Measures for Sequential Data
Efficient and expressive comparison of sequences is an essential procedure for learning with sequential data. In this article we propose a generic framework for computation of sim...
Konrad Rieck, Pavel Laskov