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» Open source tools and toolkits for bioinformatics: significa...
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BMCBI
2005
113views more  BMCBI 2005»
13 years 4 months ago
PentaPlot: A software tool for the illustration of genome mosaicism
Background: Dekapentagonal maps depict the phylogenetic relationships of five genomes in a visually appealing diagram and can be viewed as an alternative to a single evolutionary ...
Lutz Hamel, Olga Zhaxybayeva, J. Peter Gogarten
BMCBI
2010
133views more  BMCBI 2010»
13 years 2 months ago
Initial steps towards a production platform for DNA sequence analysis on the grid
Background: Bioinformatics is confronted with a new data explosion due to the availability of high throughput DNA sequencers. Data storage and analysis becomes a problem on local ...
Angela C. M. Luyf, Barbera D. C. van Schaik, Miche...
BMCBI
2010
122views more  BMCBI 2010»
13 years 5 months ago
An overview of the CellML API and its implementation
Background: CellML is an XML based language for representing mathematical models, in a machine-independent form which is suitable for their exchange between different authors, and...
Andrew K. Miller, Justin Marsh, Adam Reeve, Alan G...
CAV
2009
Springer
215views Hardware» more  CAV 2009»
14 years 5 months ago
Homer: A Higher-Order Observational Equivalence Model checkER
We present HOMER, an observational-equivalence model checker for the 3rd-order fragment of Idealized Algol (IA) augmented with iteration. It works by first translating terms of the...
David Hopkins, C.-H. Luke Ong
ICDE
2004
IEEE
151views Database» more  ICDE 2004»
14 years 6 months ago
Improved File Synchronization Techniques for Maintaining Large Replicated Collections over Slow Networks
We study the problem of maintaining large replicated collections of files or documents in a distributed environment with limited bandwidth. This problem arises in a number of impo...
Torsten Suel, Patrick Noel, Dimitre Trendafilov