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» Optimal Suffix Tree Construction with Large Alphabets
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CIKM
2009
Springer
13 years 9 months ago
Suffix trees for very large genomic sequences
A suffix tree is a fundamental data structure for string searching algorithms. Unfortunately, when it comes to the use of suffix trees in real-life applications, the current metho...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
ICDE
2004
IEEE
139views Database» more  ICDE 2004»
14 years 6 months ago
Engineering a Fast Online Persistent Suffix Tree Construction
Online persistent suffix tree construction has been considered impractical due to its excessive I/O costs. However, these prior studies have not taken into account the effects of ...
Srikanta J. Bedathur, Jayant R. Haritsa
STOC
2000
ACM
117views Algorithms» more  STOC 2000»
13 years 9 months ago
Faster suffix tree construction with missing suffix links
Abstract. We consider suffix tree construction for situations with missing suffix links. Two examples of such situations are suffix trees for parameterized strings and suffix trees...
Richard Cole, Ramesh Hariharan
JACM
2006
112views more  JACM 2006»
13 years 5 months ago
Linear work suffix array construction
Suffix trees and suffix arrays are widely used and largely interchangeable index structures on strings and sequences. Practitioners prefer suffix arrays due to their simplicity an...
Juha Kärkkäinen, Peter Sanders, Stefan B...
ESA
2005
Springer
113views Algorithms» more  ESA 2005»
13 years 10 months ago
Optimal Integer Alphabetic Trees in Linear Time
Abstract. We show that optimal alphabetic binary trees can be constructed in O(n) time if the elements of the initial sequence are drawn from a domain that can be sorted in linear ...
T. C. Hu, Lawrence L. Larmore, J. David Morgenthal...