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BMCBI
2010
115views more  BMCBI 2010»
13 years 5 months ago
Machine learning methods for metabolic pathway prediction
Background: A key challenge in systems biology is the reconstruction of an organism's metabolic network from its genome sequence. One strategy for addressing this problem is ...
Joseph M. Dale, Liviu Popescu, Peter D. Karp
BMCBI
2006
94views more  BMCBI 2006»
13 years 5 months ago
Metabolite coupling in genome-scale metabolic networks
Background: Biochemically detailed stoichiometric matrices have now been reconstructed for various bacteria, yeast, and for the human cardiac mitochondrion based on genomic and pr...
Scott A. Becker, Nathan D. Price, Bernhard O. Pals...
BMCBI
2007
148views more  BMCBI 2007»
13 years 5 months ago
Toward the automated generation of genome-scale metabolic networks in the SEED
Background: Current methods for the automated generation of genome-scale metabolic networks focus on genome annotation and preliminary biochemical reaction network assembly, but d...
Matthew DeJongh, Kevin Formsma, Paul Boillot, John...
BMCBI
2005
109views more  BMCBI 2005»
13 years 5 months ago
Automation of gene assignments to metabolic pathways using high-throughput expression data
Background: Accurate assignment of genes to pathways is essential in order to understand the functional role of genes and to map the existing pathways in a given genome. Existing ...
Liviu Popescu, Golan Yona
GECCO
2006
Springer
191views Optimization» more  GECCO 2006»
13 years 9 months ago
Automating the drug scheduling with different toxicity clearance in cancer chemotherapy via evolutionary computation
The toxicity of an anticancer drug is cleared from the body by different processes, including saturable metabolic and nonsaturable renal-excretion pathways. According to the princ...
Yong Liang, Kwong-Sak Leung, Tony Shu Kam Mok