7 search results - page 1 / 2 » Optimizing performance, cost, and sensitivity in pairwise se... |
BIBE
2008
IEEE
13 years 11 months ago
2008
IEEE
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
ISM
2008
IEEE
13 years 11 months ago
2008
IEEE
Cover song detection is becoming a very hot research topic when plentiful personal music recordings or performance are released on the Internet. A nice cover song recognizer helps...
CLUSTER
2003
IEEE
13 years 9 months ago
2003
IEEE
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
WISE
2002
Springer
13 years 9 months ago
2002
Springer
Delta compression techniques are commonly used to succinctly represent an updated version of a file with respect to an earlier one. In this paper, we study the use of delta compr...
BMCBI
2008
13 years 4 months ago
2008
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...