5 search results - page 1 / 1 » Ordered index seed algorithm for intensive DNA sequence comp... |
IPPS
2008
IEEE
13 years 11 months ago
2008
IEEE
This paper presents a seed-based algorithm for intensive DNA sequence comparison. The novelty comes from the way seeds are used to efficiently generate small ungapped alignments ...
RIVF
2008
13 years 6 months ago
2008
Abstract--Sequence similarity search is a common and repeated task in molecular biology. The rapid growth of genomic databases leads to the need of speeding up the treatment of thi...
BMCBI
2011
12 years 12 months ago
2011
Background: Computational analysis of metagenomes requires the taxonomical assignment of the genome contigs assembled from DNA reads of environmental samples. Because of the diver...
BMCBI
2007
13 years 4 months ago
2007
Background: Sequence comparison faces new challenges today, with many complete genomes and large libraries of transcripts known. Gene annotation pipelines match these sequences in...
SSDBM
2010
IEEE
13 years 9 months ago
2010
IEEE
Similarity search and similarity join on strings are important for applications such as duplicate detection, error detection, data cleansing, or comparison of biological sequences....