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LPNMR
2009
Springer
13 years 9 months ago
PHYLO-ASP: Phylogenetic Systematics with Answer Set Programming
This note summarizes the use of Answer Set Programming to solve various computational problems to infer phylogenetic trees and phylogenetic networks, and discusses its applicabilit...
Esra Erdem
JAR
2007
72views more  JAR 2007»
13 years 5 months ago
Inferring Phylogenetic Trees Using Answer Set Programming
We describe the reconstruction of a phylogeny for a set of taxa, with a character-based cladistics approach, in a declarative knowledge representation formalism, and show how to u...
Daniel R. Brooks, Esra Erdem, Selim T. Erdogan, Ja...
LPNMR
2004
Springer
13 years 10 months ago
Towards Systematic Benchmarking in Answer Set Programming: The Dagstuhl Initiative
Paul Borchert, Christian Anger, Torsten Schaub, Mi...
BMCBI
2011
13 years 1 days ago
iPhy: an integrated phylogenetic workbench for supermatrix analyses
Background: The increasing availability of molecular sequence data means that the accuracy of future phylogenetic studies is likely to by limited by systematic bias and taxon choi...
Martin O. Jones, Georgios D. Koutsovoulos, Mark L....
ICLP
2010
Springer
13 years 9 months ago
Methods and Methodologies for Developing Answer-Set Programs - Project Description
Answer-set programming (ASP) is a well-known formalism for declarative problem solving, enjoying a continuously increasing number of diverse applications. However, arguably one of ...
Johannes Oetsch, Jörg Pührer, Hans Tompi...