This note summarizes the use of Answer Set Programming to solve various computational problems to infer phylogenetic trees and phylogenetic networks, and discusses its applicabilit...
We describe the reconstruction of a phylogeny for a set of taxa, with a character-based cladistics approach, in a declarative knowledge representation formalism, and show how to u...
Daniel R. Brooks, Esra Erdem, Selim T. Erdogan, Ja...
Background: The increasing availability of molecular sequence data means that the accuracy of future phylogenetic studies is likely to by limited by systematic bias and taxon choi...
Martin O. Jones, Georgios D. Koutsovoulos, Mark L....
Answer-set programming (ASP) is a well-known formalism for declarative problem solving, enjoying a continuously increasing number of diverse applications. However, arguably one of ...