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    RECOMB
    2005
    Springer
    150views Computational Biology» more  RECOMB 2005»
    Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
    14 years 4 months ago
    Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
    Download  www.cs.purdue.edu
    Abstract. With ever increasing amount of available data on protein-protein interaction (PPI) networks and research revealing that these networks evolve at a modular level, discover...
    Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
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    RECOMB
    2007
    Springer
    160views Computational Biology» more  RECOMB 2007»
    Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology
    14 years 4 months ago
    Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology
    Download  web.mit.edu
    We describe an algorithm, IsoRank, for global alignment of two protein-protein interaction (PPI) networks. IsoRank aims to maximize the overall match between the two networks; in c...
    Rohit Singh, Jinbo Xu, Bonnie Berger
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    BMCBI
    2008
    149views more  BMCBI 2008»
    Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment s
    13 years 4 months ago
    Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment s
    Download  www.biomedcentral.com
    Background: Confidence in pairwise alignments of biological sequences, obtained by various methods such as Blast or Smith-Waterman, is critical for automatic analyses of genomic d...
    Olivier Bastien, Eric Maréchal
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    LION
    2009
    Springer
    135views Optimization» more  LION 2009»
    Neural Network Pairwise Interaction Fields for Protein Model Quality Assessment
    13 years 11 months ago
    Neural Network Pairwise Interaction Fields for Protein Model Quality Assessment
    Download  lion.disi.unitn.it
    We present a new knowledge-based Model Quality Assessment Program (MQAP) at the residue level which evaluates single protein structure models. We use a tree representation of the ...
    Alberto J. M. Martin, Alessandro Vullo, Gianluca P...
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    BMCBI
    2008
    128views more  BMCBI 2008»
    Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure
    13 years 4 months ago
    Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure
    Download  www.biomedcentral.com
    Background: Amino acid sequence probability distributions, or profiles, have been used successfully to predict secondary structure and local structure in proteins. Profile models ...
    Christopher Bystroff, Bobbie-Jo M. Webb-Robertson
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