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IPPS
2008
IEEE
13 years 12 months ago
Modeling and predicting application performance on parallel computers using HPC challenge benchmarks
A method is presented for modeling application performance on parallel computers in terms of the performance of microkernels from the HPC Challenge benchmarks. Specifically, the a...
Wayne Pfeiffer, Nicholas J. Wright
CCECE
2006
IEEE
13 years 11 months ago
Survey of Biological High Performance Computing: Algorithms, Implementations and Outlook Research
During recent years there has been an explosive growth of biological data coming from genome projects, proteomics, protein structure determination, and the rapid expansion in digi...
Nasreddine Hireche, J. M. Pierre Langlois, Gabriel...
HPDC
2008
IEEE
13 years 5 months ago
Code coverage, performance approximation and automatic recognition of idioms in scientific applications
Basic data flow patterns which we call idioms, such as stream, transpose, reduction, random access and stencil, are common in scientific numerical applications. We hypothesize tha...
Jiahua He, Allan Snavely, Rob F. Van der Wijngaart...
CCGRID
2007
IEEE
13 years 12 months ago
Active Data: Supporting the Grid Data Life Cycle
Scientific applications often involve computation intensive workflows and may generate large amount of derived data. In this paper we consider a life cycle, which starts when the ...
Tim Ho, David Abramson
HPCC
2007
Springer
13 years 11 months ago
PARMI: A Publish/Subscribe Based Asynchronous RMI Framework for Cluster Computing
This paper presents a publish/subscribe based asynchronous remote method invocation framework (PARMI) aiming to improve performance and programming flexibility. PARMI enables high-...
Heejin Son, Xiaolin Li