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» Parallel Large Scale Inference of Protein Domain Families
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BMCBI
2006
120views more  BMCBI 2006»
13 years 5 months ago
Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding prote
Background: When accurate models for the divergent evolution of protein sequences are integrated with complementary biological information, such as folded protein structures, anal...
Michael E. Bradley, Steven A. Benner
BMCBI
2005
97views more  BMCBI 2005»
13 years 5 months ago
The yeast kinome displays scale free topology with functional hub clusters
Background: The availability of interaction databases provides an opportunity for researchers to utilize immense amounts of data exclusively in silico. Recently there has been an ...
Robin E. C. Lee, Lynn A. Megeney
BMCBI
2008
142views more  BMCBI 2008»
13 years 5 months ago
Optimal neighborhood indexing for protein similarity search
Background: Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data ...
Pierre Peterlongo, Laurent Noé, Dominique L...
NIPS
2008
13 years 7 months ago
Stochastic Relational Models for Large-scale Dyadic Data using MCMC
Stochastic relational models (SRMs) [15] provide a rich family of choices for learning and predicting dyadic data between two sets of entities. The models generalize matrix factor...
Shenghuo Zhu, Kai Yu, Yihong Gong
ICPADS
2006
IEEE
13 years 11 months ago
Fast Convergence in Self-Stabilizing Wireless Networks
The advent of large scale multi-hop wireless networks highlights problems of fault tolerance and scale in distributed system, motivating designs that autonomously recover from tra...
Nathalie Mitton, Eric Fleury, Isabelle Guér...