Finding biological entities (such as genes or proteins) that satisfy certain conditions from texts is an important and challenging task in biomedical information retrieval and tex...
We propose and evaluate a query expansion mechanism that supports searching and browsing in collections of annotated documents. Based on generative language models, our feedback me...
Researchers spent a large amount of their time searching through an ever increasing number of scientific articles. Although users of scientific search engines prefer the ranking o...
Background: Many protein structures determined in high-throughput structural genomics centers, despite their significant novelty and importance, are available only as PDB depositi...
Dana Weekes, S. Sri Krishna, Constantina Bakolitsa...
Background: We present a probabilistic topic-based model for content similarity called pmra that underlies the related article search feature in PubMed. Whether or not a document ...