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» PatternHunter: faster and more sensitive homology search
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BMCBI
2008
211views more  BMCBI 2008»
13 years 5 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
BMCBI
2007
165views more  BMCBI 2007»
13 years 5 months ago
Ab initio identification of human microRNAs based on structure motifs
Background: MicroRNAs (miRNAs) are short, non-coding RNA molecules that are directly involved in post-transcriptional regulation of gene expression. The mature miRNA sequence bind...
Markus Brameier, Carsten Wiuf
SIGIR
2008
ACM
13 years 5 months ago
SpotSigs: robust and efficient near duplicate detection in large web collections
Motivated by our work with political scientists who need to manually analyze large Web archives of news sites, we present SpotSigs, a new algorithm for extracting and matching sig...
Martin Theobald, Jonathan Siddharth, Andreas Paepc...