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» Phylogenetic Super-networks from Partial Trees
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WABI
2004
Springer
107views Bioinformatics» more  WABI 2004»
13 years 10 months ago
Phylogenetic Super-networks from Partial Trees
—In practice, one is often faced with incomplete phylogenetic data, such as a collection of partial trees or partial splits. This paper poses the problem of inferring a phylogene...
Daniel H. Huson, Tobias Dezulian, Tobias H. Kl&oum...
SODA
2008
ACM
104views Algorithms» more  SODA 2008»
13 years 6 months ago
Fast and reliable reconstruction of phylogenetic trees with very short edges
Abstract Ilan Gronau Shlomo Moran Sagi Snir Phylogenetic reconstruction is the problem of reconstructing an evolutionary tree from sequences corresponding to leaves of that tree. ...
Ilan Gronau, Shlomo Moran, Sagi Snir
BMCBI
2008
138views more  BMCBI 2008»
13 years 4 months ago
Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics
Background: The availability of sequences from whole genomes to reconstruct the tree of life has the potential to enable the development of phylogenomic hypotheses in ways that ha...
Indra Neil Sarkar, Mary G. Egan, Gloria M. Coruzzi...
CCECE
2006
IEEE
13 years 10 months ago
Dynamic and Parallel Approaches to Optimal Evolutionary Tree Construction
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as Maximum parsimony (MP) and Maximum likelihood (ML). Conventional MP heuristics for produc...
Anupam Bhattacharjee, Kazi Zakia Sultana, Zalia Sh...
BMCBI
2006
116views more  BMCBI 2006»
13 years 4 months ago
TaxMan: a taxonomic database manager
Background: Phylogenetic analysis of large, multiple-gene datasets, assembled from public sequence databases, is rapidly becoming a popular way to approach difficult phylogenetic ...
Martin Jones, Mark Blaxter