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    BIOINFORMATICS
    2007
    46views more  BIOINFORMATICS 2007»
    Phylogeny reconstruction: increasing the accuracy of pairwise distance estimation using Bayesian inference of evolutionary rates
    13 years 4 months ago
    Phylogeny reconstruction: increasing the accuracy of pairwise distance estimation using Bayesian inference of evolutionary rates
    Download  www.tau.ac.il
    Matan Ninio, Eyal Privman, Tal Pupko, Nir Friedman
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    BMCBI
    2006
    137views more  BMCBI 2006»
    Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
    13 years 4 months ago
    Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
    Download  www.biomedcentral.com
    Background: Phylogenetic methods which do not rely on multiple sequence alignments are important tools in inferring trees directly from completely sequenced genomes. Here, we exte...
    Alexander F. Auch, Stefan R. Henz, Barbara R. Holl...
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    JCB
    2002
    108views more  JCB 2002»
    Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle
    13 years 4 months ago
    Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle
    Download  www.ncbi.nlm.nih.gov
    This paper investigates the standard ordinary least-squares version 24 and the balanced version 20 of the minimum evolution principle. For the standard version, we provide a greedy...
    Richard Desper, Olivier Gascuel
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    BMCBI
    2006
    156views more  BMCBI 2006»
    Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
    13 years 4 months ago
    Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
    Download  www.biomedcentral.com
    Background: Molecular evolutionary studies of noncoding sequences rely on multiple alignments. Yet how multiple alignment accuracy varies across sequence types, tree topologies, d...
    Daniel A. Pollard, Alan M. Moses, Venky N. Iyer, M...
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    BMCBI
    2010
    135views more  BMCBI 2010»
    GIGA: a simple, efficient algorithm for gene tree inference in the genomic age
    13 years 4 months ago
    GIGA: a simple, efficient algorithm for gene tree inference in the genomic age
    Download  www.biomedcentral.com
    Background: Phylogenetic relationships between genes are not only of theoretical interest: they enable us to learn about human genes through the experimental work on their relativ...
    Paul D. Thomas
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