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» PiQA: An Algebra for Querying Protein Data Sets
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SSDBM
2003
IEEE
83views Database» more  SSDBM 2003»
13 years 10 months ago
PiQA: An Algebra for Querying Protein Data Sets
Life science researchers frequently need to query large protein data sets in a variety of different ways. Protein data sets have a rich structure that includes its primary structu...
Sandeep Tata, Jignesh M. Patel
TCBB
2010
144views more  TCBB 2010»
13 years 1 days ago
Querying Graphs in Protein-Protein Interactions Networks Using Feedback Vertex Set
Recent techniques increase rapidly the amount of our knowledge on interactions between proteins. The interpretation of these new information depends on our ability to retrieve kno...
Guillaume Blin, Florian Sikora, Stéphane Vi...
TKDE
2012
253views Formal Methods» more  TKDE 2012»
11 years 7 months ago
Horizontal Aggregations in SQL to Prepare Data Sets for Data Mining Analysis
—Preparing a data set for analysis is generally the most time consuming task in a data mining project, requiring many complex SQL queries, joining tables and aggregating columns....
Carlos Ordonez, Zhibo Chen 0002
BMCBI
2005
94views more  BMCBI 2005»
13 years 5 months ago
Computational identification of strain-, species- and genus-specific proteins
Background: The identification of unique proteins at different taxonomic levels has both scientific and practical value. Strain-, species- and genus-specific proteins can provide ...
Raja Mazumder, Darren A. Natale, Sudhir Murthy, Ra...
VLDB
2002
ACM
83views Database» more  VLDB 2002»
13 years 5 months ago
Searching on the Secondary Structure of Protein Sequences
In spite of the many decades of progress in database research, surprisingly scientists in the life sciences community still struggle with inefficient and awkward tools for queryin...
Laurie Hammel, Jignesh M. Patel