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» Pipa: pipelined profiling and analysis on multi-core systems
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CGO
2008
IEEE
13 years 6 months ago
Pipa: pipelined profiling and analysis on multi-core systems
Dynamic instrumentation systems are gaining popularity as means of constructing customized program profiling and analysis tools. However, dynamic instrumentation based analysis to...
Qin Zhao, Ioana Cutcutache, Weng-Fai Wong
BMCBI
2008
141views more  BMCBI 2008»
13 years 4 months ago
The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation
Background: Automated protein function prediction methods are needed to keep pace with high-throughput sequencing. With the existence of many programs and databases for inferring ...
Chenggang Yu, Nela Zavaljevski, Valmik Desai, Seth...
BMCBI
2006
126views more  BMCBI 2006»
13 years 4 months ago
JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow
Background: Expressed sequence tag (EST) analyses provide a rapid and economical means to identify candidate genes that may be involved in a particular biological process. These E...
Mariano Latorre, Herman Silva, Juan Saba, Carito G...
BMCBI
2007
166views more  BMCBI 2007»
13 years 4 months ago
Data handling strategies for high throughput pyrosequencers
Background: New high throughput pyrosequencers such as the 454 Life Sciences GS 20 are capable of massively parallelizing DNA sequencing providing an unprecedented rate of output ...
Gabriele A. Trombetti, Raoul J. P. Bonnal, Ermanno...
SCFBM
2008
151views more  SCFBM 2008»
13 years 4 months ago
Wndchrm - an open source utility for biological image analysis
Background: Biological imaging is an emerging field, covering a wide range of applications in biological and clinical research. However, while machinery for automated experimentin...
Lior Shamir, Nikita Orlov, D. Mark Eckley, Tomasz ...