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» Pockets of Flexibility in Workflow Specification
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BMCBI
2011
13 years 16 days ago
PileLine: a toolbox to handle genome position information in next-generation sequencing studies
Background: Genomic position (GP) files currently used in next-generation sequencing (NGS) studies are always difficult to manipulate due to their huge size and the lack of approp...
Daniel Glez-Peña, Gonzalo Gómez-L&oa...
BMCBI
2010
162views more  BMCBI 2010»
13 years 5 months ago
Moara: a Java library for extracting and normalizing gene and protein mentions
Background: Gene/protein recognition and normalization are important preliminary steps for many biological text mining tasks, such as information retrieval, protein-protein intera...
Mariana L. Neves, José María Carazo,...
ICSE
2008
IEEE-ACM
14 years 6 months ago
Design and implementation of the software architecture for a 3-D reconstruction system in medical imaging
The design and implementation of the reconstruction system in medical X-ray imaging is a challenging issue due to its immense computational demands. In order to ensure an efficien...
Holger Scherl, Stefan Hoppe, Markus Kowarschik, Jo...
KBSE
2002
IEEE
13 years 10 months ago
Process Support for Tools Interoperability
Commercial tools are heavily used, relatively cheap, well maintained, and provide powerful functionalities. However, composing these tools in order to build larger applications ra...
Anh-Tuyet Le
BMCBI
2008
169views more  BMCBI 2008»
13 years 5 months ago
MausDB: An open source application for phenotype data and mouse colony management in large-scale mouse phenotyping projects
Background: Large-scale, comprehensive and standardized high-throughput mouse phenotyping has been established as a tool of functional genome research by the German Mouse Clinic a...
Holger Maier, Christoph Lengger, Bruno Simic, Helm...