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» Polyphonic Musical Sequence Alignment for Database Search
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CLEF
2008
Springer
13 years 7 months ago
Robust Question Answering for Speech Transcripts: UPC Experience in QAst 2008
This paper describes the participation of the Technical University of Catalonia in the CLEF 2008 Question Answering on Speech Transcripts track. We have participated in the Englis...
Pere Comas, Jordi Turmo
IPPS
2005
IEEE
13 years 11 months ago
FROST: Revisited and Distributed
FROST (Fold Recognition-Oriented Search Tool) [6] is a software whose purpose is to assign a 3D structure to a protein sequence. It is based on a series of filters and uses a dat...
Vincent Poirriez, Rumen Andonov, Antoine Marin, Je...
BMCBI
2005
94views more  BMCBI 2005»
13 years 5 months ago
Measuring similarities between transcription factor binding sites
Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
ENGL
2008
78views more  ENGL 2008»
13 years 5 months ago
Threshold for Positional Weight Matrix
In biological sequence research, the positional weight matrix (PWM) is often used to search for putative transcription factor binding sites. A set of experimentally verified oligon...
Yunlian Pan, Sieu Phan
BMCBI
2005
152views more  BMCBI 2005»
13 years 5 months ago
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
Markus Wistrand, Erik L. L. Sonnhammer