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IPPS
2007
IEEE
13 years 11 months ago
Porting the GROMACS Molecular Dynamics Code to the Cell Processor
The Cell processor offers substantial computational power which can be effectively utilized only if application design and implementation are tuned to the Cell architecture. In th...
Stephen Olivier, Jan Prins, Jeff Derby, Ken V. Vu
JCC
2007
121views more  JCC 2007»
13 years 5 months ago
Speeding up parallel GROMACS on high-latency networks
: We investigate the parallel scaling of the GROMACS molecular dynamics code on Ethernet Beowulf clusters and what prerequisites are necessary for decent scaling even on such clust...
Carsten Kutzner, David van der Spoel, Martin Fechn...
SC
2004
ACM
13 years 10 months ago
Analysis and Performance Results of a Molecular Modeling Application on Merrimac
The Merrimac supercomputer uses stream processors and a highradix network to achieve high performance at low cost and low power. The stream architecture matches the capabilities o...
Mattan Erez, Jung Ho Ahn, Ankit Garg, William J. D...
IPPS
2007
IEEE
13 years 11 months ago
Analysis of a Computational Biology Simulation Technique on Emerging Processing Architectures
1 Multi-paradigm, multi-threaded and multi-core computing devices available today provide several orders of magnitude performance improvement over mainstream microprocessors. These...
Jeremy S. Meredith, Sadaf R. Alam, Jeffrey S. Vett...