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RIVF
2007
13 years 7 months ago
Stochastic routing in large grid-shaped quantum networks
— This paper investigates the problem of secret key transmissions for an arbitrary Alice-Bob pair in Quantum Key Distribution (QKD)-based networks. We develop a realistic QKDbase...
Cuong Le Quoc, Patrick Bellot, Akim Demaille
BMCBI
2010
163views more  BMCBI 2010»
13 years 6 months ago
Reduced representation of protein structure: implications on efficiency and scope of detection of structural similarity
Background: Computational comparison of two protein structures is the starting point of many methods that build on existing knowledge, such as structure modeling (including modeli...
Zong Hong Zhang, Hwee Kuan Lee, Ivana Mihalek
BMCBI
2010
90views more  BMCBI 2010»
13 years 6 months ago
Local alignment of generalized k-base encoded DNA sequence
Background: DNA sequence comparison is a well-studied problem, in which two DNA sequences are compared using a weighted edit distance. Recent DNA sequencing technologies however o...
Nils Homer, Stanley F. Nelson, Barry Merriman
BMCBI
2005
117views more  BMCBI 2005»
13 years 5 months ago
An SVM-based system for predicting protein subnuclear localizations
Background: The large gap between the number of protein sequences in databases and the number of functionally characterized proteins calls for the development of a fast computatio...
Zhengdeng Lei, Yang Dai
BMCBI
2002
108views more  BMCBI 2002»
13 years 5 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy