Sciweavers

56 search results - page 3 / 12
» Practical Compressed Suffix Trees
Sort
View
JACM
2006
112views more  JACM 2006»
13 years 5 months ago
Linear work suffix array construction
Suffix trees and suffix arrays are widely used and largely interchangeable index structures on strings and sequences. Practitioners prefer suffix arrays due to their simplicity an...
Juha Kärkkäinen, Peter Sanders, Stefan B...
VLDB
2002
ACM
184views Database» more  VLDB 2002»
14 years 5 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
ICDE
2007
IEEE
190views Database» more  ICDE 2007»
13 years 9 months ago
CPS-tree: A Compact Partitioned Suffix Tree for Disk-based Indexing on Large Genome Sequences
Suffix tree is an important data structure for indexing a long sequence (like a genome sequence) or a concatenation of sequences. It finds many applications in practice, especiall...
Swee-Seong Wong, Wing-Kin Sung, Limsoon Wong
DCC
2004
IEEE
14 years 4 months ago
Online Suffix Trees with Counts
We extend Ukkonen's online suffix tree construction algorithm to support frequency queries, by adding count fields to the internal nodes of the tree, as suggested in [8]. Thi...
Breanndán Ó Nualláin, Steven ...
VLDB
2004
ACM
72views Database» more  VLDB 2004»
13 years 10 months ago
Practical Suffix Tree Construction
Sandeep Tata, Richard A. Hankins, Jignesh M. Patel