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PROCEDIA
2011
12 years 7 months ago
GPU-accelerated Chemical Similarity Assessment for Large Scale Databases
The assessment of chemical similarity between molecules is a basic operation in chemoinformatics, a computational area concerning with the manipulation of chemical structural info...
Marco Maggioni, Marco D. Santambrogio, Jie Liang
BMCBI
2010
176views more  BMCBI 2010»
13 years 4 months ago
Reverse engineering gene regulatory network from microarray data using linear time-variant model
nd: Gene regulatory network is an abstract mapping of gene regulations in living cells that can help to predict the system behavior of living organisms. Such prediction capability...
Mitra Kabir, Nasimul Noman, Hitoshi Iba
ISLPED
2003
ACM
115views Hardware» more  ISLPED 2003»
13 years 9 months ago
Reducing energy and delay using efficient victim caches
In this paper, we investigate methods for improving the hit rates in the first level of memory hierarchy. Particularly, we propose victim cache structures to reduce the number of ...
Gokhan Memik, Glenn Reinman, William H. Mangione-S...
BMCBI
2007
113views more  BMCBI 2007»
13 years 4 months ago
CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks
Background: Detailed information on DNA-binding transcription factors (the key players in the regulation of gene expression) and on transcriptional regulatory interactions of micr...
Jan Baumbach
ASPLOS
1998
ACM
13 years 8 months ago
Compiler-Controlled Memory
Optimizations aimed at reducing the impact of memory operations on execution speed have long concentrated on improving cache performance. These efforts achieve a reasonable level...
Keith D. Cooper, Timothy J. Harvey