Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
Background: Quantitative descriptions of amino acid similarity, expressed as probabilistic models of evolutionary interchangeability, are central to many mainstream bioinformatic ...
Blazej Bulka, Marie desJardins, Stephen J. Freelan...
Background: Algorithms that locate evolutionarily conserved sequences have become powerful tools for finding functional DNA elements, including transcription factor binding sites;...
Alert correlation is an important technique for managing large the volume of intrusion alerts that are raised by heterogenous Intrusion Detection Systems (IDSs). The recent trend ...
In the KL divergence framework, the extended language modeling approach has a critical problem estimating a query model, which is the probabilistic model that encodes user’s inf...