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BMCBI
2010
104views more  BMCBI 2010»
13 years 5 months ago
Parameters for accurate genome alignment
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
Martin C. Frith, Michiaki Hamada, Paul Horton
BMCBI
2006
130views more  BMCBI 2006»
13 years 5 months ago
An interactive visualization tool to explore the biophysical properties of amino acids and their contribution to substitution ma
Background: Quantitative descriptions of amino acid similarity, expressed as probabilistic models of evolutionary interchangeability, are central to many mainstream bioinformatic ...
Blazej Bulka, Marie desJardins, Stephen J. Freelan...
BMCBI
2006
87views more  BMCBI 2006»
13 years 5 months ago
Phylogeny based discovery of regulatory elements
Background: Algorithms that locate evolutionarily conserved sequences have become powerful tools for finding functional DNA elements, including transcription factor binding sites;...
Jason Gertz, Justin C. Fay, Barak A. Cohen
IJNSEC
2006
132views more  IJNSEC 2006»
13 years 5 months ago
Alert Correlation for Extracting Attack Strategies
Alert correlation is an important technique for managing large the volume of intrusion alerts that are raised by heterogenous Intrusion Detection Systems (IDSs). The recent trend ...
Bin Zhu, Ali A. Ghorbani
IPM
2007
105views more  IPM 2007»
13 years 5 months ago
Parsimonious translation models for information retrieval
In the KL divergence framework, the extended language modeling approach has a critical problem estimating a query model, which is the probabilistic model that encodes user’s inf...
Seung-Hoon Na, In-Su Kang, Jong-Hyeok Lee