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IJBRA
2006
107views more  IJBRA 2006»
13 years 4 months ago
Probabilistic models for biological sequences: selection and Maximum Likelihood estimation
: Probabilistic models for biological sequences (DNA and proteins) are frequently used in bioinformatics. We describe statistical tests designed to detect the order of dependency a...
Svetlana Ekisheva, Mark Borodovsky
BMCBI
2010
185views more  BMCBI 2010»
12 years 11 months ago
MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heu
Background: The development, in the last decade, of stochastic heuristics implemented in robust application softwares has made large phylogeny inference a key step in most compara...
Raphaël Helaers, Michel C. Milinkovitch
BMCBI
2006
137views more  BMCBI 2006»
13 years 4 months ago
A maximum likelihood framework for protein design
Background: The aim of protein design is to predict amino-acid sequences compatible with a given target structure. Traditionally envisioned as a purely thermodynamic question, thi...
Claudia L. Kleinman, Nicolas Rodrigue, Céci...
CVPR
2007
IEEE
14 years 6 months ago
Kernel-based Tracking from a Probabilistic Viewpoint
In this paper, we present a probabilistic formulation of kernel-based tracking methods based upon maximum likelihood estimation. To this end, we view the coordinates for the pixel...
Quang Anh Nguyen, Antonio Robles-Kelly, Chunhua Sh...
RECOMB
2003
Springer
14 years 4 months ago
Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals
We propose a framework for modeling sequence motifs based on the maximum entropy principle (MEP). We recommend approximating short sequence motif distributions with the maximum en...
Gene W. Yeo, Christopher B. Burge