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» Protein structural similarity search by Ramachandran codes
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BMCBI
2007
124views more  BMCBI 2007»
13 years 4 months ago
Protein structural similarity search by Ramachandran codes
Background: Protein structural data has increased exponentially, such that fast and accurate tools are necessary to access structure similarity search. To improve the search speed...
Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang, Ping...
ISMB
2003
13 years 5 months ago
PSI: indexing protein structures for fast similarity search
We consider the problem of finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements). Later, ...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...
CSB
2003
IEEE
116views Bioinformatics» more  CSB 2003»
13 years 9 months ago
Towards Index-based Similarity Search for Protein Structure Databases
We propose two methods for finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements) of prote...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...
ICANN
2003
Springer
13 years 9 months ago
Optimizing Property Codes in Protein Data Reveals Structural Characteristics
We search for assignments of numbers to the amino acids (property codes) that maximize the autocorrelation function signal in given protein sequence data by an iterative method. Ou...
Olaf Weiss, Andreas Ziehe, Hanspeter Herzel
BMCBI
2010
113views more  BMCBI 2010»
13 years 4 months ago
Efficient protein alignment algorithm for protein search
Background: Proteins show a great variety of 3D conformations, which can be used to infer their evolutionary relationship and to classify them into more general groups; therefore ...
Zaixin Lu, Zhiyu Zhao, Bin Fu