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» Randomness and the linear degrees of computability
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BMCBI
2008
144views more  BMCBI 2008»
13 years 6 months ago
Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis
Background: The prediction of conformational B-cell epitopes is one of the most important goals in immunoinformatics. The solution to this problem, even if approximate, would help...
Yanxin Huang, Yongli Bao, Shu Yan Guo, Yan Wang, C...
CORR
2008
Springer
128views Education» more  CORR 2008»
13 years 6 months ago
A Fast Generic Sequence Matching Algorithm
A string matching--and more generally, sequence matching--algorithm is presented that has a linear worst-case computing time bound, a low worst-case bound on the number of compari...
David R. Musser, Gor V. Nishanov
BMCBI
2007
202views more  BMCBI 2007»
13 years 6 months ago
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics
Background: Protein interactions support cell organization and mediate its response to any specific stimulus. Recent technological advances have produced large data-sets that aim ...
Massimo Bernaschi, Filippo Castiglione, Alessandra...
JMLR
2008
168views more  JMLR 2008»
13 years 6 months ago
Max-margin Classification of Data with Absent Features
We consider the problem of learning classifiers in structured domains, where some objects have a subset of features that are inherently absent due to complex relationships between...
Gal Chechik, Geremy Heitz, Gal Elidan, Pieter Abbe...
EOR
2007
93views more  EOR 2007»
13 years 6 months ago
Exact algorithms for procurement problems under a total quantity discount structure
In this paper, we study the procurement problem faced by a buyer who needs to purchase a variety of goods from suppliers applying a so-called total quantity discount policy. This ...
Dries R. Goossens, A. J. T. Maas, Frits C. R. Spie...