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BMCBI
2008
147views more  BMCBI 2008»
13 years 5 months ago
Assessment of disease named entity recognition on a corpus of annotated sentences
Background: In recent years, the recognition of semantic types from the biomedical scientific literature has been focused on named entities like protein and gene names (PGNs) and ...
Antonio Jimeno-Yepes, Ernesto Jiménez-Ruiz,...
ITNG
2006
IEEE
13 years 11 months ago
Biomedical Term Disambiguation: An Application to Gene-Protein Name Disambiguation
The huge volumes of biomedical texts available online drives the increasing need for automated techniques to analyze and extract knowledge from these repositories of information. ...
Hisham Al-Mubaid, Ping Chen
JCP
2008
104views more  JCP 2008»
13 years 5 months ago
Analysis and Improved Recognition of Protein Names Using Transductive SVM
We first analyzed protein names using various dictionaries and databases and found five problems with protein names; i.e., the treatment of special characters, the treatment of hom...
Masaki Murata, Tomohiro Mitsumori, Kouichi Doi
BMCBI
2005
125views more  BMCBI 2005»
13 years 5 months ago
A simple approach for protein name identification: prospects and limits
Background: Significant parts of biological knowledge are available only as unstructured text in articles of biomedical journals. By automatically identifying gene and gene produc...
Katrin Fundel, Daniel Güttler, Ralf Zimmer, J...
BMCBI
2008
117views more  BMCBI 2008»
13 years 5 months ago
Cascaded classifiers for confidence-based chemical named entity recognition
Chemical named entities represent an important facet of biomedical text. We have developed a system to use character-based ngrams, Maximum Entropy Markov Models and rescoring to r...
Peter Corbett, Ann A. Copestake