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JCB
2007
92views more  JCB 2007»
13 years 5 months ago
Neighbor Joining Algorithms for Inferring Phylogenies via LCA Distances
Reconstructing phylogenetic trees efficiently and accurately from distance estimates is an ongoing challenge in computational biology from both practical and theoretical consider...
Ilan Gronau, Shlomo Moran
SODA
2004
ACM
124views Algorithms» more  SODA 2004»
13 years 6 months ago
On contract-and-refine transformations between phylogenetic trees
The inference of evolutionary trees using approaches which attempt to solve the maximum parsimony (MP) and maximum likelihood (ML) optimization problems is a standard part of much...
Ganeshkumar Ganapathy, Vijaya Ramachandran, Tandy ...
CLASSIFICATION
2006
78views more  CLASSIFICATION 2006»
13 years 5 months ago
Astrocladistics: A Phylogenetic Analysis of Galaxy Evolution II. Formation and Diversification of Galaxies
:This series of papers is intended to evaluate astrocladistics in reconstructing phylogenies of galaxies. The objective of this second paper is to formalize the concept of galaxy f...
Didier Fraix-Burnet, Philippe Choler, Emmanuel J. ...
BMCBI
2008
140views more  BMCBI 2008»
13 years 5 months ago
FUNYBASE: a FUNgal phYlogenomic dataBASE
Background: The increasing availability of fungal genome sequences provides large numbers of proteins for evolutionary and phylogenetic analyses. However the heterogeneity of data...
Sylvain Marthey, Gabriela Aguileta, Françoi...
BMCBI
2008
96views more  BMCBI 2008»
13 years 5 months ago
Novel methodology for construction and pruning of quasi-median networks
Background: Visualising the evolutionary history of a set of sequences is a challenge for molecular phylogenetics. One approach is to use undirected graphs, such as median network...
Sarah C. Ayling, Terence A. Brown