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» Reconstructing the Topology of Protein Complexes
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BMCBI
2010
156views more  BMCBI 2010»
13 years 4 months ago
Protein complex prediction via verifying and reconstructing the topology of domain-domain interactions
Background: High-throughput methods for detecting protein-protein interactions enable us to obtain large interaction networks, and also allow us to computationally identify the as...
Yosuke Ozawa, Rintaro Saito, Shigeo Fujimori, Hisa...
RECOMB
2007
Springer
14 years 4 months ago
Reconstructing the Topology of Protein Complexes
Abstract. Recent advances in high-throughput experimental techniques have enabled the production of a wealth of protein interaction data, rich in both quantity and variety. While t...
Allister Bernard, David S. Vaughn, Alexander J. Ha...
BMCBI
2008
131views more  BMCBI 2008»
13 years 4 months ago
Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
Background: Identification of protein complexes is crucial for understanding principles of cellular organization and functions. As the size of protein-protein interaction set incr...
Min Li, Jianer Chen, Jianxin Wang, Bin Hu, Gang Ch...
DGCI
2006
Springer
13 years 8 months ago
Topological and Geometrical Reconstruction of Complex Objects on Irregular Isothetic Grids
In this paper, we address the problem of vectorization of binary images on irregular isothetic grids. The representation of graphical elements by lines is common in document analys...
Antoine Vacavant, David Coeurjolly, Laure Tougne
BMCBI
2010
104views more  BMCBI 2010»
13 years 4 months ago
Analysis of protein-protein docking decoys using interaction fingerprints: application to the reconstruction of CaM-ligand compl
Background: Protein-protein docking for proteins with large conformational changes was analyzed by using interaction fingerprints, one of the scales for measuring similarities amo...
Nobuyuki Uchikoga, Takatsugu Hirokawa