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» Reconstructing the Topology of Protein Complexes
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BMCBI
2008
96views more  BMCBI 2008»
13 years 5 months ago
Novel methodology for construction and pruning of quasi-median networks
Background: Visualising the evolutionary history of a set of sequences is a challenge for molecular phylogenetics. One approach is to use undirected graphs, such as median network...
Sarah C. Ayling, Terence A. Brown
BMCBI
2008
112views more  BMCBI 2008»
13 years 5 months ago
GlycomeDB - integration of open-access carbohydrate structure databases
Background: Although carbohydrates are the third major class of biological macromolecules, after proteins and DNA, there is neither a comprehensive database for carbohydrate struc...
René Ranzinger, Stephan Herget, Thomas Wett...
DASFAA
2008
IEEE
188views Database» more  DASFAA 2008»
13 years 11 months ago
Summarization Graph Indexing: Beyond Frequent Structure-Based Approach
Graph is an important data structure to model complex structural data, such as chemical compounds, proteins, and XML documents. Among many graph data-based applications, sub-graph ...
Lei Zou, Lei Chen 0002, Huaming Zhang, Yansheng Lu...
BMCBI
2004
149views more  BMCBI 2004»
13 years 5 months ago
MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states
Background: Information obtained by DNA microarray technology gives a rough snapshot of the transcriptome state, i.e., the expression level of all the genes expressed in a cell po...
Gaëlle Lelandais, Philippe Marc, Pierre Vince...
IS
2010
13 years 3 months ago
Tree pattern mining with tree automata constraints
Most work on pattern mining focuses on simple data structures such as itemsets and sequences of itemsets. However, a lot of recent applications dealing with complex data like chem...
Sandra de Amo, Nyara A. Silva, Ronaldo P. Silva, F...