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APPML
2005
55views more  APPML 2005»
13 years 4 months ago
Recovering a phylogenetic tree using pairwise closure operations
A fundamental task in evolutionary biology is the amalgamation of a collection P of leaf-labelled trees into a single parent tree. A desirable feature of any such amalgamation is ...
Katharina T. Huber, Vincent Moulton, Charles Sempl...
INFOCOM
2012
IEEE
11 years 7 months ago
Robust multi-source network tomography using selective probes
—Knowledge of a network’s topology and internal characteristics such as delay times or losses is crucial to maintain seamless operation of network services. Network tomography ...
Akshay Krishnamurthy, Aarti Singh
JCB
2002
108views more  JCB 2002»
13 years 4 months ago
Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle
This paper investigates the standard ordinary least-squares version 24 and the balanced version 20 of the minimum evolution principle. For the standard version, we provide a greedy...
Richard Desper, Olivier Gascuel
BMCBI
2006
143views more  BMCBI 2006»
13 years 4 months ago
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences
Background: The estimation of the difference between two evolutionary distances within a triplet of homologs is a common operation that is used for example to determine which of t...
Christophe Dessimoz, Manuel Gil, Adrian Schneider,...
BIOINFORMATICS
2011
12 years 8 months ago
RINQ: Reference-based Indexing for Network Queries
We consider the problem of similarity queries in biological network databases. Given a database of networks, similarity query returns all the database networks whose similarity (i...
Günhan Gülsoy, Tamer Kahveci