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BMCBI
2006
145views more  BMCBI 2006»
13 years 5 months ago
Querying the public databases for sequences using complex keywords contained in the feature lines
Background: High throughput technologies often require the retrieval of large data sets of sequences. Retrieval of EMBL or GenBank entries using keywords is easy using tools such ...
Olivier Croce, Michaël Lamarre, Richard Chris...
BMCBI
2007
120views more  BMCBI 2007»
13 years 5 months ago
Non-coding sequence retrieval system for comparative genomic analysis of gene regulatory elements
Background: Completion of the human genome sequence along with other species allows for greater understanding of the biochemical mechanisms and processes that govern healthy as we...
Sung Tae Doh, Yunyu Zhang, Matthew H. Temple, Li C...
CIKM
2008
Springer
13 years 7 months ago
A system for finding biological entities that satisfy certain conditions from texts
Finding biological entities (such as genes or proteins) that satisfy certain conditions from texts is an important and challenging task in biomedical information retrieval and tex...
Wei Zhou, Clement T. Yu, Weiyi Meng
SIGIR
1999
ACM
13 years 9 months ago
From Reading to Retrieval: Freeform Ink Annotations as Queries
User interfaces for digital libraries tend to focus on retrieval: users retrieve documents online, but then print them out and work with them on paper. One reason for printing doc...
Gene Golovchinsky, Morgan N. Price, Bill N. Schili...
BMCBI
2008
140views more  BMCBI 2008»
13 years 5 months ago
GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations
Background: The most renowned biological ontology, Gene Ontology (GO) is widely used for annotations of genes and gene products of different organisms. However, there are shortcom...
Qingwei Xu, Yixiang Shi, Qiang Lu, Guo-qing Zhang,...