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BMCBI
2010
196views more  BMCBI 2010»
13 years 3 months ago
Content-based microarray search using differential expression profiles
Background: With the expansion of public repositories such as the Gene Expression Omnibus (GEO), we are rapidly cataloging cellular transcriptional responses to diverse experiment...
Jesse M. Engreitz, Alexander A. Morgan, Joel Dudle...
BMCBI
2007
180views more  BMCBI 2007»
13 years 5 months ago
Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data
Background: The Affymetrix™ technology is nowadays a well-established method for the analysis of gene expression profiles in cancer research studies. However, changes in gene ex...
Davide Rambaldi, Barbara Felice, Viviane Praz, Phi...
TREC
2007
13 years 7 months ago
Entity-Based Relevance Feedback for Genomic List Answer Retrieval
In this paper we present a system which uses ontological resources and a gene name variation generation tool to expand concepts in the original query. The novelty of our approach ...
Nicola Stokes, Yi Li, Lawrence Cavedon, Eric Huang...
BMCBI
2007
142views more  BMCBI 2007»
13 years 5 months ago
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics
nd: A key abstraction in representing proteomics knowledge is the notion of unique identifiers for individual entities (e.g. proteins) and the massive graph of relationships among...
Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Mar...
BMCBI
2004
162views more  BMCBI 2004»
13 years 5 months ago
Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: binary feature versus invariant m
Background: Modern developmental biology relies heavily on the analysis of embryonic gene expression patterns. Investigators manually inspect hundreds or thousands of expression p...
Rajalakshmi Gurunathan, Bernard Van Emden, Sethura...