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BIOINFORMATICS
2011
12 years 12 months ago
Rigid substructure search
David Shirvanyants, Anastassia N. Alexandrova, Nik...
ICDE
2006
IEEE
177views Database» more  ICDE 2006»
14 years 6 months ago
Searching Substructures with Superimposed Distance
Efficient indexing techniques have been developed for the exact and approximate substructure search in large scale graph databases. Unfortunately, the retrieval problem of structu...
Xifeng Yan, Feida Zhu, Jiawei Han, Philip S. Yu
BMCBI
2010
122views more  BMCBI 2010»
13 years 5 months ago
Fast and accurate protein substructure searching with simulated annealing and GPUs
Background: Searching a database of protein structures for matches to a query structure, or occurrences of a structural motif, is an important task in structural biology and bioin...
Alex Stivala, Peter J. Stuckey, Anthony Wirth
SIGMOD
2005
ACM
166views Database» more  SIGMOD 2005»
14 years 5 months ago
Substructure Similarity Search in Graph Databases
Advanced database systems face a great challenge raised by the emergence of massive, complex structural data in bioinformatics, chem-informatics, and many other applications. The ...
Xifeng Yan, Philip S. Yu, Jiawei Han
SIGMOD
2010
ACM
196views Database» more  SIGMOD 2010»
13 years 8 months ago
Connected substructure similarity search
Substructure similarity search is to retrieve graphs that approximately contain a given query graph. It has many applications, e.g., detecting similar functions among chemical com...
Haichuan Shang, Xuemin Lin, Ying Zhang, Jeffrey Xu...