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SODA
1996
ACM
140views Algorithms» more  SODA 1996»
13 years 6 months ago
An O(n log n) Algorithm for the Maximum Agreement Subtree Problem for Binary Trees
The Maximum Agreement Subtree problem is the following: given two rooted trees whose leaves are drawn from the same set of items (e.g., species), find the largest subset of these i...
Richard Cole, Ramesh Hariharan
DAM
2010
112views more  DAM 2010»
13 years 5 months ago
New results on optimizing rooted triplets consistency
Abstract. A set of phylogenetic trees with overlapping leaf sets is consistent if it can be merged without conflicts into a supertree. In this paper, we study the polynomial-time a...
Jaroslaw Byrka, Sylvain Guillemot, Jesper Jansson
CPM
2004
Springer
120views Combinatorics» more  CPM 2004»
13 years 10 months ago
Polynomial-Time Algorithms for the Ordered Maximum Agreement Subtree Problem
For a set of rooted, unordered, distinctly leaf-labeled trees, the NP-hard maximum agreement subtree problem (MAST) asks for a tree contained (up to isomorphism or homeomorphism) i...
Anders Dessmark, Jesper Jansson, Andrzej Lingas, E...
TKDE
2008
153views more  TKDE 2008»
13 years 5 months ago
Discovering Frequent Agreement Subtrees from Phylogenetic Data
We study a new data mining problem concerning the discovery of frequent agreement subtrees (FASTs) from a set of phylogenetic trees. A phylogenetic tree, or phylogeny, is an unorde...
Sen Zhang, Jason Tsong-Li Wang
BMCBI
2010
118views more  BMCBI 2010»
13 years 5 months ago
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
Background: To understand the evolutionary role of Lateral Gene Transfer (LGT), accurate methods are needed to identify transferred genes and infer their timing of acquisition. Ph...
Sophie S. Abby, Eric Tannier, Manolo Gouy, Vincent...