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BIOINFORMATICS
2008
172views more  BIOINFORMATICS 2008»
13 years 6 months ago
Fitting a geometric graph to a protein-protein interaction network
Motivation: Finding a good network null model for protein-protein interaction (PPI) networks is a fundamental issue. Such a model would provide insights into the interplay between...
Desmond J. Higham, Marija Rasajski, Natasa Przulj
BMCBI
2010
109views more  BMCBI 2010»
13 years 6 months ago
Free energy estimation of short DNA duplex hybridizations
Background: Estimation of DNA duplex hybridization free energy is widely used for predicting cross-hybridizations in DNA computing and microarray experiments. A number of software...
Dan C. Tulpan, Mirela Andronescu, Serge Leger
BMCBI
2010
88views more  BMCBI 2010»
13 years 6 months ago
Robust probabilistic superposition and comparison of protein structures
Background: Protein structure comparison is a central issue in structural bioinformatics. The standard dissimilarity measure for protein structures is the root mean square deviati...
Martin Mechelke, Michael Habeck
BMCBI
2008
146views more  BMCBI 2008»
13 years 6 months ago
Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?
Background: Recent approaches for predicting the three-dimensional (3D) structure of proteins such as de novo or fold recognition methods mostly rely on simplified energy potentia...
Jean-François Taly, Antoine Marin, Jean-Fra...
CORR
2010
Springer
65views Education» more  CORR 2010»
13 years 6 months ago
On Unconditionally Secure Computation with Vanishing Communication Cost
We propose a novel distortion-theoretic approach to a secure three-party computation problem. Alice and Bob have deterministic sequences, and Charlie wishes to compute a normalize...
Ye Wang, Shantanu Rane, Wei Sun, Prakash Ishwar