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» SAMPI: Protein Identification with Mass Spectra Alignments
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BMCBI
2007
149views more  BMCBI 2007»
13 years 4 months ago
SAMPI: Protein Identification with Mass Spectra Alignments
Background: Mass spectrometry based peptide mass fingerprints (PMFs) offer a fast, efficient, and robust method for protein identification. A protein is digested (usually by tryps...
Hans-Michael Kaltenbach, Andreas Wilke, Sebastian ...
DATESO
2010
169views Database» more  DATESO 2010»
13 years 2 months ago
Parametrised Hausdorff Distance as a Non-Metric Similarity Model for Tandem Mass Spectrometry
Abstract. Tandem mass spectrometry is a widely used method for protein and peptide sequences identification. Since the mass spectra contain up to 80% of noise and many other inaccu...
Jiri Novák, David Hoksza
PKDD
2009
Springer
118views Data Mining» more  PKDD 2009»
13 years 11 months ago
Protein Identification from Tandem Mass Spectra with Probabilistic Language Modeling
This paper presents an interdisciplinary investigation of statistical information retrieval (IR) techniques for protein identification from tandem mass spectra, a challenging probl...
Yiming Yang, Abhay Harpale, Subramaniam Ganapathy
SIGIR
2009
ACM
13 years 11 months ago
Protein identification as an information retrieval problem
We present the first interdisciplinary work on transforming a popular problem in proteomics, i.e. protein identification from tandem mass spectra, to an Information Retrieval (IR)...
Yiming Yang, Subramaniam Ganapathy, Abhay Harpale
BIB
2011
12 years 11 months ago
Protein mass spectra data analysis for clinical biomarker discovery: a global review
The identification of new diagnostic or prognostic biomarkers is one of the main aims of clinical cancer research. In recent years there has been a growing interest in using high ...
Pascal Roy, Caroline Truntzer, Delphine Maucort-Bo...