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» SMOTIF: efficient structured pattern and profile motif searc...
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KDD
2010
ACM
199views Data Mining» more  KDD 2010»
13 years 8 months ago
Online discovery and maintenance of time series motifs
The detection of repeated subsequences, time series motifs, is a problem which has been shown to have great utility for several higher-level data mining algorithms, including clas...
Abdullah Mueen, Eamonn J. Keogh
BMCBI
2008
123views more  BMCBI 2008»
13 years 5 months ago
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
Background: The structure of many eukaryotic cell regulatory proteins is highly modular. They are assembled from globular domains, segments of natively disordered polypeptides and...
Claudia Chica, Alberto Labarga, Cathryn M. Gould, ...
BMCBI
2002
108views more  BMCBI 2002»
13 years 4 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy
GBRPR
2007
Springer
13 years 9 months ago
An Efficient Ontology-Based Expert Peering System
Abstract. This paper proposes an expert peering system for information exchange. Our objective is to develop a real-time search engine for an online community where users can ask e...
Tansu Alpcan, Christian Bauckhage, Sachin Agarwal