10 search results - page 1 / 2 » Sampling Conformation Space to Model Equilibrium Fluctuation... |
ALGORITHMICA
2007
13 years 4 months ago
2007
This paper proposes the Protein Ensemble Method (PEM) to model equilibrium fluctuations in proteins where fragments of the protein polypeptide chain can move independently of one ...
ICCS
2009
Springer
13 years 2 months ago
2009
Springer
Protein loop structure modeling is regarded as a mini protein folding problem with significant scientific importance. Efficiently sampling the loop conformation space is a key step...
BMCBI
2008
13 years 4 months ago
2008
Background: Recent approaches for predicting the three-dimensional (3D) structure of proteins such as de novo or fold recognition methods mostly rely on simplified energy potentia...
BMCBI
2010
13 years 4 months ago
2010
Background: Many structural properties such as solvent accessibility, dihedral angles and helix-helix contacts can be assigned to each residue in a membrane protein. Independent s...
BMCBI
2010
13 years 4 months ago
2010
Background: Accurately covering the conformational space of amino acid side chains is essential for important applications such as protein design, docking and high resolution stru...