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WISE
2005
Springer
13 years 10 months ago
Semantic Web Technologies for Interpreting DNA Microarray Analyses: The MEAT System
Abstract. This paper describes MEAT (Memory of Experiments for the Analysis of Transcriptomes), a project aiming at supporting biologists working on DNA microarrays. We provide met...
Khaled Khelif, Rose Dieng-Kuntz, Pascal Barbry
JUCS
2007
106views more  JUCS 2007»
13 years 4 months ago
An Ontology-based Approach to Support Text Mining and Information Retrieval in the Biological Domain
: This paper describes an ontology-based approach aiming at helping biologists to annotate their documents and at facilitating their information retrieval task. Our approach, based...
Khaled Khelif, Rose Dieng-Kuntz, Pascal Barbry
BMCBI
2005
103views more  BMCBI 2005»
13 years 4 months ago
MicroGen: a MIAME compliant web system for microarray experiment information and workflow management
Background: Improvements of bio-nano-technologies and biomolecular techniques have led to increasing production of high-throughput experimental data. Spotted cDNA microarray is on...
Sarah Burgarella, Dario Cattaneo, Francesco Pincir...
BMCBI
2008
115views more  BMCBI 2008»
13 years 4 months ago
Probe signal correction for differential methylation hybridization experiments
Background: Non-biological signal (or noise) has been the bane of microarray analysis. Hybridization effects related to probe-sequence composition and DNA dye-probe interactions h...
Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang,...
BMCBI
2011
12 years 11 months ago
Investigating the effect of paralogs on microarray gene-set analysis
Background: In order to interpret the results obtained from a microarray experiment, researchers often shift focus from analysis of individual differentially expressed genes to an...
Andre J. Faure, Cathal Seoighe, Nicola J. Mulder