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BMCBI
2008
77views more  BMCBI 2008»
13 years 5 months ago
SeqAn An efficient, generic C++ library for sequence analysis
Background: The use of novel algorithmic techniques is pivotal to many important problems in life science. For example the sequencing of the human genome [1] would not have been p...
Andreas Döring, David Weese, Tobias Rausch, K...
CORR
2008
Springer
128views Education» more  CORR 2008»
13 years 5 months ago
A Fast Generic Sequence Matching Algorithm
A string matching--and more generally, sequence matching--algorithm is presented that has a linear worst-case computing time bound, a low worst-case bound on the number of compari...
David R. Musser, Gor V. Nishanov

Source Code
579views
14 years 27 days ago
The CImg Library
The CImg Library is an open source, C++ toolkit for image processing, designed with these properties in mind : Usefulness CImg defines classes and methods to manage images in y...
David Tschumperlé
BMCBI
2005
143views more  BMCBI 2005»
13 years 4 months ago
Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries
Background: In expressed sequence tag (EST) sequencing, we are often interested in how many genes we can capture in an EST sample of a targeted size. This information provides ins...
Ji-Ping Z. Wang, Bruce G. Lindsay 0002, Liying Cui...
BMCBI
2007
128views more  BMCBI 2007»
13 years 5 months ago
A Bayesian nonparametric method for prediction in EST analysis
Background: Expressed sequence tags (ESTs) analyses are a fundamental tool for gene identification in organisms. Given a preliminary EST sample from a certain library, several sta...
Antonio Lijoi, Ramsés H. Mena, Igor Prü...